Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
6
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
Assay category
18
DNA binding
9
Transcription
6
3D chromatin structure
6
DNA methylation
DNA accessibility
Target of assay
19
histone
19
histone modification
12
broad histone mark
narrow histone mark
6
control
Date released
19
August, 2017
10
July, 2019
5
March, 2020
2
February, 2020
2
June, 2019
1
May, 2019
1
May, 2022
Available data
23
bigWig
18
bam
16
bed narrowPeak
10
tagAlign
9
tsv
8
bed broadPeak
bigBed narrowPeak
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
Organism
40
Homo sapiens
Biosample type
35
tissue
5
primary cell
Organ
660
pancreas
607
connective tissue
466
adipose tissue
364
liver
331
epithelium
234
heart
162
kidney
147
bone element
106
vasculature
104
blood vessel
71
artery
71
brain
40
musculature of body
29
embryo
29
limb
25
eye
16
nerve
11
spleen
10
lung
8
vein
6
blood
6
bodily fluid
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
40
AMP
Genome assembly (visualization)
19
hg19
7
GRCh38
Lab
40
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_slims!
DNA accessibility
files.file_type!
bigBed narrowPeak
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
40 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
WGBS
pCHi-C
single cell RNA-seq
tissue
skeletal muscle tissue
15
1
4
1
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
muscle of leg
1
1
left ventricle myocardium
1
primary cell
skeletal muscle satellite cell
1
1
1
skeletal muscle cell
1
1
Download