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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
41
ChIP-seq
17
pCHi-C
7
total RNA-seq
1
DNAme array
Assay category
41
DNA binding
DNA accessibility
7
Transcription
1
DNA methylation
Target of assay
24
histone
24
histone modification
12
broad histone mark
12
narrow histone mark
12
transcription factor
5
RNA binding protein
5
control
Date released
184
August, 2021
113
February, 2021
101
May, 2022
100
February, 2023
91
August, 2017
79
October, 2019
66
May, 2021
56
September, 2020
51
November, 2017
47
September, 2023
44
March, 2020
29
October, 2018
25
February, 2020
23
July, 2019
23
May, 2019
22
December, 2017
15
April, 2019
10
November, 2020
9
April, 2020
8
February, 2018
8
June, 2019
7
November, 2018
6
September, 2017
5
December, 2018
5
December, 2019
5
March, 2023
4
January, 2019
4
July, 2018
4
May, 2023
4
November, 2019
4
October, 2022
3
May, 2020
1
August, 2018
1
March, 2019
1
October, 2017
1
September, 2018
Available data
bigWig
264
bam
173
tsv
120
bed narrowPeak
tagAlign
2
bed bed3+
Organism
66
Homo sapiens
Biosample type
42
in vitro differentiated cells
22
primary cell
2
tissue
Organ
1
bone element
1
bone marrow
1
connective tissue
1
pancreas
1
thymus
Project
49
AMP
17
T1D
Lab
60
Kyle Gaulton, UCSD
6
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_slims!
DNA accessibility
files.file_type!
bigWig
tagAlign
target.investigated_as!
recombinant protein
BIOSAMPLE
ASSAY
66 results
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Clear Filters
ChIP-seq
pCHi-C
total RNA-seq
DNAme array
in vitro differentiated cells
embryonic stem cell
37
5
primary cell
monocyte
1
1
1
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
CD4-positive, alpha-beta T cell
2
neutrophil
1
1
B cell
1
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tissue
pancreas
1
thymus
1
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