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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
120
ChIP-seq
20
total RNA-seq
4
WGBS
3
Hi-C
2
RRBS
2
STARR-seq
1
pCHi-C
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
120
DNA binding
21
Transcription
6
DNA methylation
3
3D chromatin structure
DNA accessibility
1
DNA sequencing
Target of assay
95
control
20
histone
20
histone modification
12
broad histone mark
8
narrow histone mark
5
transcription factor
2
RNA binding protein
1
recombinant protein
Date released
47
November, 2017
35
August, 2017
23
May, 2020
20
May, 2022
13
December, 2017
9
August, 2021
2
February, 2021
2
July, 2019
1
December, 2018
1
March, 2020
1
November, 2018
Available data
673
bam
bigWig
461
fastq
413
bed narrowPeak
352
bigBed narrowPeak
tsv
86
tagAlign
58
bed broadPeak
58
bigBed broadPeak
8
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
csv
1
hdf5
1
vcf
Organism
154
Homo sapiens
Biosample type
93
tissue
58
cell line
2
primary cell
1
in vitro differentiated cells
Organ
191
pancreas
154
liver
143
epithelium
128
kidney
94
connective tissue
89
bone element
61
adipose tissue
48
brain
28
heart
28
vasculature
27
blood vessel
24
musculature of body
22
eye
22
limb
11
nerve
9
artery
9
lung
8
embryo
8
spleen
7
vein
6
blood
6
bodily fluid
4
gonad
4
ovary
4
skeleton
1
bone marrow
1
lymph node
1
pericardium
1
thymus
Project
154
AMP
Genome assembly (visualization)
6
hg19
1
GRCh38
Lab
126
AMP-T2D consortium
20
Karen Mohlke, UNC
8
Bing Ren, UCSD
Audit category:
1
missing controlled_by
assay_slims!
DNA accessibility
files.file_type!
bigWig
tsv
month_released!
March, 2019
BIOSAMPLE
ASSAY
154 results
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ChIP-seq
total RNA-seq
WGBS
Hi-C
RRBS
STARR-seq
pCHi-C
single cell RNA-seq
whole genome sequencing assay
tissue
liver
63
20
3
1
1
1
right lobe of liver
3
1
cell line
HepG2
52
2
2
1
1
primary cell
hepatocyte
1
1
in vitro differentiated cells
hepatocyte
1
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