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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
20
ChIP-seq
3
Hi-C
3
pCHi-C
3
total RNA-seq
2
RRBS
2
WGBS
Assay category
96
Transcription
DNA accessibility
20
DNA binding
4
DNA methylation
3
3D chromatin structure
Target of assay
20
control
Date released
92
August, 2021
10
April, 2019
6
May, 2019
5
March, 2020
4
July, 2019
3
February, 2020
2
February, 2021
2
June, 2019
1
February, 2023
1
October, 2019
Available data
bigWig
169
bam
168
tsv
114
bed narrowPeak
64
bigBed narrowPeak
8
bed bedMethyl
8
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
126
Homo sapiens
Biosample type
121
tissue
3
primary cell
2
cell line
Organ
172
pancreas
140
epithelium
140
kidney
131
liver
126
heart
89
bone element
62
brain
38
connective tissue
38
vasculature
37
blood vessel
27
eye
25
limb
24
adipose tissue
14
musculature of body
13
artery
12
nerve
10
lung
9
spleen
8
embryo
7
vein
6
blood
6
bodily fluid
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
lymph node
1
mammary gland
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
126
AMP
Genome assembly (visualization)
5
hg19
Lab
126
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
assay_slims!
DNA accessibility
files.file_type!
bigWig
month_released!
August, 2017
organ_slims!
lymph node
BIOSAMPLE
ASSAY
126 results
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single cell RNA-seq
ChIP-seq
Hi-C
pCHi-C
total RNA-seq
RRBS
WGBS
tissue
heart left ventricle
18
6
1
1
1
2
heart right ventricle
17
2
1
1
right cardiac atrium
18
1
1
left cardiac atrium
18
aortic valve
4
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primary cell
cardiac fibroblast
2
1
cell line
smooth muscle cell of the coronary artery
2
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