Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ChIP-seq
6
Hi-C
5
RRBS
1
pCHi-C
1
single cell RNA-seq
1
total RNA-seq
Assay category
12
DNA binding
6
3D chromatin structure
5
DNA methylation
2
Transcription
DNA accessibility
Target of assay
6
control
6
histone
6
histone modification
4
broad histone mark
2
narrow histone mark
Date released
13
August, 2017
5
July, 2019
3
March, 2020
2
June, 2019
1
February, 2020
1
May, 2019
1
May, 2022
Available data
bigWig
27
bed narrowPeak
24
bam
15
tagAlign
14
bigBed narrowPeak
13
bed broadPeak
8
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
Organism
26
Homo sapiens
Biosample type
23
tissue
3
primary cell
Organ
201
pancreas
166
liver
152
epithelium
140
kidney
heart
98
connective tissue
89
bone element
64
adipose tissue
62
brain
38
vasculature
37
blood vessel
27
eye
27
musculature of body
25
limb
13
artery
12
nerve
10
lung
8
embryo
8
spleen
7
vein
5
gonad
5
ovary
4
skeleton
3
blood
3
bodily fluid
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
26
AMP
Genome assembly (visualization)
5
hg19
Lab
26
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_slims!
DNA accessibility
files.file_type!
bigWig
month_released!
January, 2019
organ_slims!
heart
BIOSAMPLE
ASSAY
26 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
Hi-C
RRBS
pCHi-C
single cell RNA-seq
total RNA-seq
tissue
skeletal muscle tissue
9
4
1
gastrocnemius medialis
4
1
psoas muscle
2
1
muscle of leg
1
primary cell
skeletal muscle cell
1
1
skeletal muscle satellite cell
1
Download