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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
ChIP-seq
30
total RNA-seq
4
WGBS
3
Hi-C
3
pCHi-C
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
73
DNA binding
31
Transcription
6
DNA methylation
3
3D chromatin structure
DNA accessibility
1
DNA sequencing
Target of assay
52
control
20
histone
20
histone modification
12
broad histone mark
8
narrow histone mark
1
recombinant protein
1
transcription factor
Date released
November, 2017
35
August, 2017
24
May, 2020
20
May, 2022
18
August, 2021
13
December, 2017
2
February, 2021
2
July, 2019
2
March, 2020
1
December, 2018
1
February, 2020
1
November, 2018
Available data
359
bam
bigWig
174
tsv
164
bed narrowPeak
146
fastq
103
bigBed narrowPeak
74
tagAlign
8
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
csv
1
hdf5
1
vcf
Organism
119
Homo sapiens
Biosample type
95
tissue
21
cell line
2
primary cell
1
in vitro differentiated cells
Organ
201
pancreas
152
epithelium
140
kidney
126
heart
119
liver
98
connective tissue
89
bone element
64
adipose tissue
38
vasculature
37
blood vessel
37
brain
27
eye
27
musculature of body
25
limb
13
artery
12
nerve
10
lung
9
spleen
8
embryo
7
vein
6
blood
6
bodily fluid
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
119
AMP
Genome assembly (visualization)
6
hg19
1
GRCh38
Lab
82
AMP-T2D consortium
20
Karen Mohlke, UNC
17
Bing Ren, UCSD
Audit category:
1
missing controlled_by
assay_slims!
DNA accessibility
files.file_type!
bigWig
month_released!
November, 2017
BIOSAMPLE
ASSAY
119 results
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ChIP-seq
total RNA-seq
WGBS
Hi-C
pCHi-C
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
63
20
3
1
1
1
1
right lobe of liver
3
1
1
cell line
HepG2
5
9
2
2
2
1
primary cell
hepatocyte
1
1
in vitro differentiated cells
hepatocyte
1
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