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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
total RNA-seq
21
ChIP-seq
5
pCHi-C
4
Hi-C
1
RRBS
Assay category
DNA accessibility
22
Transcription
21
DNA binding
4
3D chromatin structure
1
DNA methylation
Target of assay
18
control
3
histone
3
histone modification
3
narrow histone mark
Date released
37
October, 2019
5
July, 2019
4
February, 2020
4
February, 2023
1
June, 2019
1
March, 2020
1
May, 2019
Available data
73
bam
bigWig
50
bed narrowPeak
50
bigBed narrowPeak
13
tsv
2
bed bedMethyl
2
bigBed bedMethyl
Organism
53
Homo sapiens
Biosample type
51
tissue
2
primary cell
Organ
201
pancreas
166
liver
152
epithelium
140
kidney
126
heart
98
connective tissue
89
bone element
64
adipose tissue
62
brain
38
vasculature
37
blood vessel
27
eye
27
musculature of body
25
limb
13
artery
12
nerve
10
lung
9
spleen
8
embryo
7
vein
6
blood
6
bodily fluid
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
53
AMP
Genome assembly (visualization)
1
hg19
Lab
53
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_slims!
DNA accessibility
files.file_type!
bigWig
BIOSAMPLE
ASSAY
53 results
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total RNA-seq
ChIP-seq
pCHi-C
Hi-C
RRBS
tissue
islet of Langerhans
14
3
4
tibial nerve
1
11
tibial artery
1
5
gastrocnemius medialis
1
4
retina
3
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primary cell
retinal pigment epithelial cell
1
1
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