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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
9
ChIP-seq
2
Hi-C
1
pCHi-C
Assay category
9
DNA binding
2
3D chromatin structure
Target of assay
7
histone
7
histone modification
5
narrow histone mark
2
broad histone mark
2
control
Date released
10
October, 2019
2
March, 2020
Available data
17
bam
bigWig
10
bed narrowPeak
10
bigBed narrowPeak
2
bed broadPeak
2
bigBed broadPeak
2
hic
1
bedpe bed3+
1
tsv
Organism
12
Homo sapiens
Biosample type
7
primary cell
5
tissue
Organ
201
pancreas
166
liver
152
epithelium
140
kidney
126
heart
98
connective tissue
89
bone element
64
adipose tissue
62
brain
38
vasculature
37
blood vessel
27
eye
27
musculature of body
25
limb
13
artery
12
nerve
10
lung
9
spleen
8
embryo
7
vein
6
blood
6
bodily fluid
5
gonad
5
ovary
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
12
AMP
Genome assembly (visualization)
2
hg19
Lab
12
AMP-T2D consortium
Audit category:
1
audit script error
assay_slims!
DNA accessibility
files.file_type!
bigWig
organ_slims!
skeleton
BIOSAMPLE
ASSAY
12 results
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ChIP-seq
Hi-C
pCHi-C
primary cell
endothelial cell of umbilical vein
5
2
tissue
islet of Langerhans
4
ovary
1
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