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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
88
ChIP-seq
21
total RNA-seq
4
Hi-C
1
WGBS
Assay category
88
DNA binding
DNA accessibility
21
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
61
histone
61
histone modification
38
broad histone mark
24
control
23
narrow histone mark
3
transcription factor
Date released
63
October, 2019
13
December, 2017
13
February, 2018
8
August, 2021
7
May, 2019
5
July, 2019
3
February, 2020
2
May, 2021
January, 2018
Available data
106
bam
81
bigWig
62
bed narrowPeak
48
bigBed narrowPeak
26
fastq
21
tsv
3
bed bed3+
1
bed bedMethyl
1
bigBed bedMethyl
Organism
114
Homo sapiens
Biosample type
78
tissue
28
in vitro differentiated cells
8
cell line
Organ
773
pancreas
761
liver
650
connective tissue
483
adipose tissue
401
epithelium
316
heart
249
brain
186
kidney
178
vasculature
174
blood vessel
147
bone element
92
artery
78
limb
61
musculature of body
60
blood
60
bodily fluid
40
nerve
36
embryo
29
eye
23
spleen
19
vein
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
114
AMP
Genome assembly (visualization)
81
GRCh38
81
hg19
Lab
114
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
assay_slims!
DNA accessibility
files.file_type!
csv
month_released!
January, 2018
BIOSAMPLE
ASSAY
114 results
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ChIP-seq
total RNA-seq
Hi-C
WGBS
tissue
tibial nerve
35
5
tibial artery
23
1
muscle of leg
7
1
gastrocnemius medialis
1
4
islet of Langerhans
1
in vitro differentiated cells
pancreatic endoderm
18
4
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
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