Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
ChIP-seq
6
Hi-C
6
total RNA-seq
3
RRBS
2
pCHi-C
2
small RNA-seq
1
WGBS
1
single cell RNA-seq
Assay category
DNA accessibility
32
DNA binding
9
Transcription
6
3D chromatin structure
4
DNA methylation
Target of assay
27
histone
27
histone modification
16
broad histone mark
11
narrow histone mark
5
control
Date released
24
August, 2017
10
July, 2019
10
June, 2019
May, 2019
6
March, 2020
2
February, 2020
1
May, 2022
Available data
42
bigWig
39
bam
33
bed narrowPeak
fastq
20
bigBed narrowPeak
15
tagAlign
13
bed broadPeak
10
tsv
6
bed bedMethyl
6
bigBed bedMethyl
2
bedpe bed3+
2
hic
Organism
53
Homo sapiens
Biosample type
40
tissue
13
primary cell
Organ
553
connective tissue
442
adipose tissue
361
pancreas
301
liver
295
heart
203
brain
186
kidney
171
epithelium
147
bone element
122
vasculature
121
blood vessel
87
artery
71
limb
52
musculature of body
40
nerve
29
eye
19
vein
10
embryo
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
53
AMP
Genome assembly (visualization)
30
hg19
15
GRCh38
Lab
53
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
assay_slims!
DNA accessibility
files.file_type!
fastq
month_released!
May, 2019
BIOSAMPLE
ASSAY
53 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
Hi-C
total RNA-seq
RRBS
pCHi-C
small RNA-seq
WGBS
single cell RNA-seq
tissue
skeletal muscle tissue
22
1
2
1
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
left ventricle myocardium
1
muscle of leg
1
+ See 1 more…
primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
See all biosamples
Download