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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1290total RNA-seq
  • 1014ChIP-seq
  • 235single cell RNA-seq
  • 87RNA microarray
  • 58WGBS
  • 56pCHi-C
  • 33Hi-C
  • 18small RNA-seq
  • 17RRBS
  • 10MeRIP-seq
  • 5STARR-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3snDrop-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 1547Transcription
  • 1014DNA binding
  • DNA accessibility
  • 76DNA methylation
  • 333D chromatin structure
  • 1DNA sequencing
Target of assay
  • 787histone
  • 787histone modification
  • 404narrow histone mark
  • 383broad histone mark
  • 175control
  • 60transcription factor
  • 25RNA binding protein
  • 7recombinant protein
  • 5nucleotide modification
Date released
  • 648February, 2021
  • 365May, 2021
  • 281October, 2019
  • 241May, 2020
  • 237August, 2021
  • 122August, 2017
  • 120May, 2019
  • 118July, 2018
  • 100July, 2019
  • 95May, 2022
  • 82November, 2017
  • 80April, 2019
  • 60March, 2020
  • 47September, 2023
  • 40May, 2024
  • 35November, 2019
  • 31June, 2019
  • 25February, 2020
  • 24February, 2023
  • 18September, 2020
  • 16October, 2018
  • 14November, 2020
  • 10December, 2019
  • 9April, 2020
  • 6October, 2017
  • 5April, 2018
  • 5March, 2023
  • 4May, 2023
  • 4October, 2022
  • 1March, 2019
Available data
  • 3003bam
  • 2819bigWig
  • 1586tsv
  • 1325bed narrowPeak
  • fastq
  • 801bigBed narrowPeak
  • 398tagAlign
  • 157txt
  • 114bed broadPeak
  • 93zippedFastqFolder
  • 79bigBed broadPeak
  • 64bed bed3+
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 8csv
  • 5hdf5
  • 3cool
  • 3tar
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 2836Homo sapiens
Biosample type
  • 1971tissue
  • 451primary cell
  • 211in vitro differentiated cells
  • 204cell line
  • 6stem cell
Organ
  • 553connective tissue
  • 442adipose tissue
  • 363pancreas
  • 316heart
  • 301liver
  • 231brain
  • 191kidney
  • 176epithelium
  • 172vasculature
  • 171blood vessel
  • 147bone element
  • 92artery
  • 78limb
  • 59musculature of body
  • 40nerve
  • 29eye
  • 19vein
  • 10embryo
  • 10lung
  • 5gonad
  • 5ovary
  • 4skeleton
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1pituitary gland
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1urinary bladder
Project
  • 2472AMP
  • 215T1D
  • 95HPAP
  • 47KPMP
  • 9LungMap
  • 4community
  • 1ITG
Genome assembly (visualization)
  • 1815hg19
  • 1788GRCh38
Lab
  • 2232AMP-T2D consortium
  • 285Kyle Gaulton, UCSD
  • 95Klaus Kaestner, Upenn
  • 61Katalin Susztak, Upenn
  • 47KPMP
  • 40Patrick T. Ellinor, Broad
  • 37Bing Ren, UCSD
  • 20Karen Mohlke, UNC
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 9Xin Sun, UCSD
  • 4Anna Gloyn, Oxford
  • 2Struan F.A. Grant, CHOP
  • 1ITG
Audit category:
  • 296inconsistent ontology term
  • 13audit script error
Audit category:
  • 1inconsistent assembly
assay_slims!
  • DNA accessibility
files.file_type!
  • fastq
BIOSAMPLE
ASSAY

2843 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
RNA microarray
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
MeRIP-seq
STARR-seq
Capture-C
CRISPR genome editing followed by DNA sequencing
snDrop-seq
HiChIP
CRISPR RNA-seq
CRISPR genome editing followed by sgRNA sequencing
CRISPRi RNA-seq
DNAme array
MPRA
...and 3 more
tissue
adipose tissue3821
liver1677812111
islet of Langerhans195434314
kidney49276411
bone element84
primary cell
monocyte548511
Langerhans cell51
CD8-positive, alpha-beta T cell4331
pancreatic alpha cell251
endothelial cell of umbilical vein172
in vitro differentiated cells
cardiomyocytes593
embryonic stem cell5371
neural progenitor cell721
adipocyte5141
cardiac precursors (cardiac muscle cell)191
cell line
EndoC_BH13315162321
smooth muscle cell of the coronary artery526
HepG2918212
Panc1131
H1-hESC8
stem cell
SB Ad3.111
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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