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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
90
ChIP-seq
10
MeRIP-seq
4
total RNA-seq
Assay category
90
DNA binding
4
Transcription
DNA accessibility
Target of assay
42
transcription factor
31
histone
31
histone modification
26
control
16
narrow histone mark
15
broad histone mark
5
nucleotide modification
RNA binding protein
3
chromatin remodeller
Date released
666
February, 2021
392
August, 2017
369
November, 2017
360
May, 2021
281
October, 2019
241
May, 2020
236
August, 2021
168
July, 2018
115
May, 2019
101
May, 2022
100
February, 2023
100
July, 2019
90
December, 2017
76
April, 2019
65
October, 2018
59
September, 2018
58
March, 2020
57
November, 2018
56
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
May, 2024
34
November, 2019
33
December, 2018
27
June, 2019
25
February, 2020
24
January, 2019
15
October, 2017
14
November, 2020
10
December, 2019
9
April, 2020
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
March, 2019
Available data
94
bam
90
fastq
72
bigWig
68
bed narrowPeak
46
bigBed narrowPeak
15
bed bed3+
4
tsv
Organism
104
Homo sapiens
Biosample type
50
tissue
41
in vitro differentiated cells
6
cell line
4
primary cell
3
stem cell
Organ
59
liver
23
epithelium
13
embryo
10
pancreas
4
connective tissue
Project
104
AMP
Genome assembly (visualization)
77
GRCh38
77
hg19
Lab
94
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
27
inconsistent control
10
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
11
inconsistent control read length
assay_slims!
DNA accessibility
files.file_type!
ibed
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
104 results
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Clear Filters
ChIP-seq
MeRIP-seq
total RNA-seq
tissue
liver
37
right lobe of liver
9
islet of Langerhans
4
in vitro differentiated cells
hepatocyte
13
pancreatic endoderm
9
Posterior foregut
5
definitive endodermal cell
5
primitive gut cell
5
+ See 1 more…
cell line
EndoC_BH1
6
primary cell
osteoblast
4
stem cell
hESC
3
See all biosamples
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