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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
147
ChIP-seq
89
total RNA-seq
9
WGBS
6
RRBS
Assay category
147
DNA binding
89
Transcription
15
DNA methylation
DNA accessibility
Target of assay
125
histone modification
124
histone
broad histone mark
59
narrow histone mark
47
transcription factor
39
control
8
RNA binding protein
3
chromatin remodeller
Date released
658
February, 2021
319
November, 2017
251
August, 2017
243
May, 2021
191
May, 2020
177
October, 2019
176
August, 2021
168
July, 2018
101
May, 2022
100
February, 2023
100
July, 2019
79
December, 2017
78
November, 2018
62
May, 2019
60
March, 2020
57
October, 2018
56
September, 2020
49
April, 2018
47
September, 2023
43
April, 2019
42
September, 2018
35
December, 2018
31
February, 2018
29
November, 2019
26
January, 2019
25
February, 2020
23
June, 2019
20
May, 2024
14
November, 2020
10
December, 2019
9
April, 2020
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
October, 2017
Available data
229
fastq
223
bam
201
bigWig
89
tsv
76
bed narrowPeak
tagAlign
27
bed bed3+
17
bed broadPeak
14
bigBed narrowPeak
7
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
251
Homo sapiens
Biosample type
178
tissue
41
in vitro differentiated cells
32
primary cell
Organ
143
pancreas
73
connective tissue
32
adipose tissue
24
liver
20
epithelium
7
musculature of body
Project
251
AMP
Genome assembly (visualization)
189
hg19
186
GRCh38
Lab
251
AMP-T2D consortium
Audit category:
34
missing controlled_by
Audit category:
13
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
assay_slims!
DNA accessibility
files.file_type!
tagAlign
lab.title!
Bing Ren, UCSD
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
251 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
tissue
islet of Langerhans
23
89
liver
20
3
1
subcutaneous abdominal adipose tissue
12
3
white adipose tissue
12
skeletal muscle tissue
3
4
+ See 2 more…
in vitro differentiated cells
adipocyte
41
primary cell
pancreatic alpha cell
10
pancreatic beta cell
10
pancreatic endocrine cell
8
skeletal muscle myoblast
3
1
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