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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
328
ChIP-seq
10
MeRIP-seq
4
total RNA-seq
Assay category
328
DNA binding
DNA accessibility
4
Transcription
Target of assay
244
transcription factor
66
recombinant protein
65
control
37
RNA binding protein
21
histone
21
histone modification
15
chromatin remodeller
12
narrow histone mark
9
broad histone mark
5
nucleotide modification
2
other context
2
other post-translational modification
Date released
658
February, 2021
328
November, 2017
315
August, 2017
275
May, 2021
232
October, 2019
213
August, 2021
191
May, 2020
168
July, 2018
120
May, 2019
101
May, 2022
100
February, 2023
100
July, 2019
94
December, 2017
80
April, 2019
78
November, 2018
76
October, 2018
60
March, 2020
59
September, 2018
56
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
35
November, 2019
31
June, 2019
30
January, 2019
25
February, 2020
14
November, 2020
10
December, 2019
9
April, 2020
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
March, 2019
1
October, 2017
0
January, 2021
Available data
396
bam
338
bigWig
324
fastq
313
bed narrowPeak
312
bigBed narrowPeak
tagAlign
70
bed broadPeak
64
bigBed broadPeak
4
tsv
3
tar
Organism
342
Homo sapiens
Biosample type
309
cell line
20
tissue
13
primary cell
Organ
303
liver
25
brain
12
epithelium
10
pancreas
6
vasculature
4
connective tissue
3
blood vessel
Project
342
AMP
Genome assembly (visualization)
267
hg19
230
GRCh38
Lab
332
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
Audit category:
10
missing controlled_by
Audit category:
10
inconsistent control read length
4
inconsistent control run_type
assay_slims!
DNA accessibility
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
342 results
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Clear Filters
ChIP-seq
MeRIP-seq
total RNA-seq
cell line
HepG2
303
EndoC_BH1
6
tissue
layer of hippocampus
8
middle frontal area 46
6
islet of Langerhans
4
cerebellum (Hemisphere)
2
primary cell
osteoblast
4
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
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