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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
553
ChIP-seq
184
total RNA-seq
7
WGBS
4
pCHi-C
3
Hi-C
3
small RNA-seq
2
STARR-seq
1
RRBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
553
DNA binding
188
Transcription
DNA accessibility
8
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
342
transcription factor
114
control
94
histone modification
93
histone
82
recombinant protein
56
RNA binding protein
55
narrow histone mark
38
broad histone mark
22
chromatin remodeller
5
other context
5
other post-translational modification
Date released
315
November, 2017
194
May, 2020
58
November, 2018
52
August, 2017
48
December, 2017
31
August, 2021
20
May, 2022
12
January, 2019
8
December, 2018
8
July, 2019
6
October, 2019
4
March, 2020
2
February, 2021
1
February, 2020
Available data
671
bam
587
bigWig
468
fastq
408
bed narrowPeak
350
bigBed narrowPeak
170
tsv
82
tagAlign
58
bed broadPeak
58
bigBed broadPeak
4
bed bed3+
4
bed bedMethyl
4
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
csv
1
vcf
Organism
759
Homo sapiens
Biosample type
400
cell line
359
tissue
Organ
773
pancreas
762
liver
650
connective tissue
483
adipose tissue
epithelium
316
heart
248
brain
191
kidney
178
vasculature
174
blood vessel
147
bone element
92
artery
78
limb
61
musculature of body
60
blood
60
bodily fluid
40
nerve
37
embryo
29
eye
23
spleen
19
vein
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
759
AMP
Genome assembly (visualization)
585
hg19
515
GRCh38
Lab
708
AMP-T2D consortium
31
Bing Ren, UCSD
20
Karen Mohlke, UNC
Audit category:
27
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
assay_slims!
DNA accessibility
files.file_type!
tagAlign bed3+
organ_slims!
epithelium
BIOSAMPLE
ASSAY
759 results
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ChIP-seq
total RNA-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
STARR-seq
RRBS
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
378
14
1
2
2
2
1
tissue
liver
145
167
3
1
1
1
1
1
spleen
20
2
1
right lobe of liver
10
3
1
2
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