Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
49
total RNA-seq
43
ChIP-seq
8
single cell RNA-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
DNA accessibility
57
Transcription
43
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
20
histone
20
histone modification
12
control
11
narrow histone mark
11
transcription factor
9
broad histone mark
1
RNA binding protein
Date released
406
November, 2017
311
August, 2017
230
October, 2019
191
May, 2021
120
May, 2019
114
August, 2021
101
May, 2022
94
December, 2017
92
February, 2023
80
April, 2019
78
November, 2018
74
October, 2018
56
September, 2020
52
May, 2020
47
September, 2023
40
May, 2024
35
December, 2018
35
July, 2019
33
September, 2018
31
June, 2019
25
January, 2019
24
February, 2018
23
February, 2021
17
March, 2020
15
November, 2019
15
October, 2017
10
November, 2020
9
April, 2020
6
September, 2017
5
January, 2018
5
March, 2023
4
July, 2018
4
May, 2023
4
October, 2022
1
August, 2018
1
December, 2019
1
March, 2019
Available data
tsv
57
txt
45
bigWig
39
bam
30
bed narrowPeak
24
tagAlign
5
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
113
Homo sapiens
Biosample type
60
tissue
27
cell line
23
in vitro differentiated cells
4
primary cell
Organ
60
kidney
26
liver
6
epithelium
3
connective tissue
3
pancreas
1
adipose tissue
Project
114
AMP
Genome assembly (visualization)
33
hg19
16
GRCh38
Lab
58
Katalin Susztak, Upenn
28
AMP-T2D consortium
26
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
assay_slims!
DNA accessibility
files.file_type!
tsv
organ_slims!
bone element
nerve
BIOSAMPLE
ASSAY
114 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
49
8
1
islet of Langerhans
1
subcutaneous adipose tissue
1
cell line
HepG2
18
2
1
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
21
adipocyte
1
osteoblast
1
primary cell
hepatocyte
4
Download