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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
66
ChIP-seq
4
Hi-C
4
total RNA-seq
1
WGBS
1
pCHi-C
Assay category
66
DNA binding
DNA accessibility
4
3D chromatin structure
4
Transcription
1
DNA methylation
Target of assay
49
histone
49
histone modification
34
broad histone mark
17
control
15
narrow histone mark
Date released
84
February, 2021
59
October, 2019
7
May, 2019
5
July, 2019
4
February, 2023
1
May, 2021
Available data
128
bam
111
bigWig
88
txt
tsv
48
bed narrowPeak
48
bigBed narrowPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
160
Homo sapiens
Biosample type
159
tissue
1
primary cell
Organ
588
liver
358
pancreas
246
epithelium
223
brain
172
connective tissue
167
kidney
148
heart
110
vasculature
106
blood vessel
89
bone element
82
adipose tissue
71
limb
60
blood
60
bodily fluid
52
musculature of body
35
nerve
34
artery
24
eye
23
embryo
22
spleen
19
vein
9
lung
4
gonad
4
ovary
4
skeleton
1
bone marrow
1
lymph node
1
pericardium
1
pituitary gland
1
thymus
Project
159
AMP
1
T1D
Genome assembly (visualization)
48
GRCh38
48
hg19
Lab
159
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
assay_slims!
DNA accessibility
files.file_type!
tsv
BIOSAMPLE
ASSAY
160 results
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RNA microarray
ChIP-seq
Hi-C
total RNA-seq
WGBS
pCHi-C
tissue
bone element
84
tibial nerve
35
tibial artery
23
muscle of leg
7
1
gastrocnemius medialis
4
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primary cell
megakaryocyte
1
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