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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
66
ChIP-seq
17
total RNA-seq
8
WGBS
3
Hi-C
3
pCHi-C
2
RRBS
1
small RNA-seq
Assay category
111
Transcription
66
DNA binding
DNA accessibility
10
DNA methylation
3
3D chromatin structure
Target of assay
53
histone
53
histone modification
30
broad histone mark
23
narrow histone mark
7
RNA binding protein
7
transcription factor
6
control
Date released
92
August, 2021
April, 2019
40
May, 2024
19
July, 2019
16
May, 2019
8
October, 2019
7
March, 2020
5
June, 2019
3
May, 2021
2
February, 2020
1
February, 2023
Available data
113
tsv
82
bigWig
60
bed narrowPeak
48
bam
15
bigBed narrowPeak
8
bed bedMethyl
8
bigBed bedMethyl
3
bedpe bed3+
3
hic
Organism
193
Homo sapiens
Biosample type
184
tissue
8
primary cell
1
in vitro differentiated cells
Organ
773
pancreas
762
liver
650
connective tissue
483
adipose tissue
401
epithelium
259
heart
249
brain
vasculature
174
blood vessel
168
kidney
147
bone element
92
artery
78
limb
61
musculature of body
60
blood
60
bodily fluid
40
nerve
37
embryo
29
eye
23
spleen
19
vein
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
193
AMP
Genome assembly (visualization)
82
GRCh38
41
hg19
Lab
153
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
5
inconsistent ontology term
assay_slims!
DNA accessibility
files.file_type!
xls
month_released!
April, 2019
organ_slims!
vasculature
BIOSAMPLE
ASSAY
193 results
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single cell RNA-seq
ChIP-seq
total RNA-seq
WGBS
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
left cardiac atrium
18
40
heart left ventricle
18
3
4
1
1
1
right cardiac atrium
18
6
1
1
heart right ventricle
17
1
2
1
1
heart
1
5
4
1
1
1
+ See 9 more…
primary cell
cardiac fibroblast
5
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
in vitro differentiated cells
cardiac fibroblast
1
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