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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
14
total RNA-seq
2
Hi-C
1
GRO-seq
1
pCHi-C
Assay category
39
DNA binding
14
Transcription
DNA accessibility
2
3D chromatin structure
Target of assay
27
histone
27
histone modification
14
narrow histone mark
13
broad histone mark
9
control
3
transcription factor
Date released
18
October, 2019
13
December, 2017
13
February, 2018
8
August, 2021
2
March, 2020
2
May, 2021
1
January, 2018
Available data
53
bam
41
bigWig
27
fastq
24
bed narrowPeak
15
tsv
10
bigBed narrowPeak
3
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
2
hic
1
bedpe bed3+
Organism
57
Homo sapiens
Biosample type
29
in vitro differentiated cells
19
primary cell
8
cell line
1
tissue
Organ
762
liver
732
pancreas
650
connective tissue
483
adipose tissue
360
epithelium
316
heart
249
brain
191
kidney
178
vasculature
174
blood vessel
147
bone element
92
artery
78
limb
61
musculature of body
60
blood
60
bodily fluid
40
nerve
37
embryo
29
eye
23
spleen
19
vein
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
57
AMP
Genome assembly (visualization)
43
hg19
39
GRCh38
1
hg18
Lab
57
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
1
audit script error
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
assay_slims!
DNA accessibility
files.file_type!
zippedFastqFolder
BIOSAMPLE
ASSAY
57 results
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ChIP-seq
total RNA-seq
Hi-C
GRO-seq
pCHi-C
in vitro differentiated cells
pancreatic endoderm
18
4
1
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
primary cell
endothelial cell of umbilical vein
17
2
cell line
H1-hESC
8
tissue
small intestine
1
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