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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
4
total RNA-seq
3
ChIP-seq
2
small RNA-seq
1
WGBS
Assay category
DNA accessibility
6
Transcription
3
DNA binding
1
DNA methylation
Target of assay
14
histone
histone modification
8
broad histone mark
6
narrow histone mark
3
control
Date released
5
July, 2019
2
June, 2019
2
March, 2020
1
May, 2019
Available data
10
bam
10
tsv
7
bigWig
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
2
tagAlign
Organism
10
Homo sapiens
Biosample type
6
tissue
4
primary cell
Organ
593
liver
545
connective tissue
477
pancreas
436
adipose tissue
182
epithelium
108
heart
91
vasculature
89
blood vessel
68
artery
59
blood
59
bodily fluid
58
bone element
42
brain
34
kidney
24
embryo
22
limb
16
spleen
15
nerve
10
musculature of body
2
eye
2
vein
1
pericardium
0
spinal cord
Project
10
AMP
Genome assembly (visualization)
7
GRCh38
6
hg19
Lab
10
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_slims!
DNA accessibility
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
10 results
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total RNA-seq
ChIP-seq
small RNA-seq
WGBS
tissue
muscle of leg
1
1
psoas muscle
2
skeletal muscle tissue
1
1
primary cell
skeletal muscle satellite cell
1
1
1
skeletal muscle cell
1
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