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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1578ChIP-seq
  • 1282total RNA-seq
  • 106single cell RNA-seq
  • 18WGBS
  • 18small RNA-seq
  • 1pCHi-C
Assay category
  • 1578DNA binding
  • 1406Transcription
  • DNA accessibility
  • 18DNA methylation
Target of assay
  • 785histone modification
  • 784histone
  • 485transcription factor
  • 405narrow histone mark
  • 378broad histone mark
  • 306control
  • 103RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 554February, 2021
  • 392November, 2017
  • 272August, 2017
  • 264May, 2021
  • 238May, 2020
  • 235October, 2019
  • 164July, 2018
  • 120May, 2019
  • 94December, 2017
  • 79April, 2019
  • 77November, 2018
  • 76October, 2018
  • 74July, 2019
  • 58September, 2018
  • 49April, 2018
  • 39August, 2021
  • 39February, 2018
  • 34December, 2018
  • 33November, 2019
  • 31June, 2019
  • 30January, 2019
  • 16March, 2020
  • 8October, 2017
  • 6May, 2022
  • 6September, 2017
  • 5December, 2019
  • 4November, 2020
  • 3August, 2018
  • 3June, 2018
Available data
  • 3003bam
  • 2819bigWig
  • 1586tsv
  • 1325bed narrowPeak
  • 1256fastq
  • 801bigBed narrowPeak
  • 398tagAlign
  • 157txt
  • 114bed broadPeak
  • 93zippedFastqFolder
  • 79bigBed broadPeak
  • 64bed bed3+
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 8csv
  • 5hdf5
  • 3cool
  • 3tar
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 2996Homo sapiens
Biosample type
  • 1662tissue
  • 570cell line
  • 495primary cell
  • 273in vitro differentiated cells
  • 3stem cell
Organ
  • 673liver
  • 614pancreas
  • 579connective tissue
  • 437adipose tissue
  • 275epithelium
  • 208brain
  • 169heart
  • 162vasculature
  • 159blood vessel
  • 88artery
  • 70limb
  • 64kidney
  • 60blood
  • 60bodily fluid
  • 58bone element
  • 39nerve
  • 36embryo
  • 24musculature of body
  • 22spleen
  • 17vein
  • 3eye
  • 1pericardium
  • 1pituitary gland
Project
  • 2817AMP
  • 186T1D
Genome assembly (visualization)
  • 2641GRCh38
  • 2635hg19
Lab
  • 2817AMP-T2D consortium
  • 186Kyle Gaulton, UCSD
Audit category:
  • 193inconsistent ontology term
  • 28inconsistent control
Audit category:
  • 88missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
assay_slims!
  • DNA accessibility
BIOSAMPLE
ASSAY

3003 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
WGBS
small RNA-seq
pCHi-C
tissue
adipose tissue23812
islet of Langerhans302666
liver1221471
bone tissue58
body of pancreas35222
cell line
HepG235951
GM1287860
smooth muscle cell of the coronary artery652
EndoC_BH11533
Panc113
primary cell
monocyte8453
pancreatic alpha cell131012
pancreatic beta cell131012
pancreatic ductal cell13410
pancreatic acinar cell8412
in vitro differentiated cells
cardiomyocytes359
adipocyte534
neural progenitor cell207
pancreatic endoderm184
cardiac precursors (cardiac muscle cell)19
stem cell
hESC3
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