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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
ChIP-seq
4
total RNA-seq
2
small RNA-seq
1
WGBS
Assay category
DNA accessibility
27
DNA binding
6
Transcription
1
DNA methylation
Target of assay
27
histone
27
histone modification
16
broad histone mark
11
narrow histone mark
Date released
13
August, 2017
8
June, 2019
6
May, 2019
5
July, 2019
2
March, 2020
Available data
34
bigWig
27
bed narrowPeak
24
bam
15
tagAlign
14
bigBed narrowPeak
13
bed broadPeak
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
0
bed bed3+
0
hdf5
Organism
34
Homo sapiens
Biosample type
24
tissue
10
primary cell
Organ
598
liver
574
pancreas
556
connective tissue
419
adipose tissue
249
epithelium
190
heart
187
brain
140
vasculature
137
blood vessel
79
artery
58
bone element
54
blood
54
bodily fluid
53
limb
51
kidney
34
musculature of body
30
embryo
28
nerve
14
spleen
12
vein
2
eye
1
pericardium
1
pituitary gland
Project
34
AMP
Genome assembly (visualization)
33
hg19
20
GRCh38
Lab
34
AMP-T2D consortium
Audit category:
7
inconsistent ontology term
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
34 results
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ChIP-seq
total RNA-seq
small RNA-seq
WGBS
tissue
skeletal muscle tissue
13
1
1
muscle of leg
6
1
psoas muscle
2
primary cell
skeletal muscle satellite cell
7
1
1
skeletal muscle cell
1
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