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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 53ChIP-seq
  • 5Hi-C
  • 2Capture-C
  • 2pCHi-C
  • 2total RNA-seq
Assay category
  • DNA accessibility
  • 53DNA binding
  • 53D chromatin structure
  • 2Transcription
Target of assay
  • 25histone
  • 25histone modification
  • 19transcription factor
  • 13narrow histone mark
  • 12broad histone mark
  • 9control
  • 2RNA binding protein
Date released
  • 33August, 2017
  • 15December, 2017
  • 5August, 2021
  • 4July, 2019
  • 2February, 2021
  • 2May, 2021
  • 2September, 2017
  • 1October, 2019
Available data
  • 3003bam
  • 2819bigWig
  • 1586tsv
  • 1325bed narrowPeak
  • 1256fastq
  • 801bigBed narrowPeak
  • 398tagAlign
  • 157txt
  • 114bed broadPeak
  • 93zippedFastqFolder
  • 79bigBed broadPeak
  • 64bed bed3+
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 8csv
  • 5hdf5
  • 3cool
  • 3tar
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 64Homo sapiens
Biosample type
  • 28tissue
  • 21in vitro differentiated cells
  • 10primary cell
  • 3stem cell
  • 2cell line
Organ
  • 22pancreas
  • 15connective tissue
  • 8liver
  • 5epithelium
  • 4adipose tissue
  • 3brain
  • 3embryo
  • 2blood vessel
  • 2vasculature
Project
  • 64AMP
Genome assembly (visualization)
  • 64hg19
  • 54GRCh38
Lab
  • 60AMP-T2D consortium
  • 2Kyle Gaulton, UCSD
  • 2Struan F.A. Grant, CHOP
Audit category:
  • 14missing controlled_by
Audit category:
  • 10inconsistent control read length
  • 1inconsistent assembly
assay_slims!
  • DNA accessibility
BIOSAMPLE
ASSAY

64 results

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Clear Filters
ChIP-seq
Hi-C
Capture-C
pCHi-C
total RNA-seq
tissue
islet of Langerhans21
white adipose tissue4
liver3
in vitro differentiated cells
adipocyte71
Posterior foregut3
definitive endodermal cell3
pancreatic endoderm3
primitive gut cell3
primary cell
hepatocyte3
CD8-positive, alpha-beta T cell2
astrocyte of the cerebellum1
brain microvascular endothelial cell1
brain pericyte1
stem cell
hESC3
cell line
HepG21
Panc11
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