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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
324
total RNA-seq
147
ChIP-seq
80
single cell RNA-seq
4
WGBS
2
small RNA-seq
1
Hi-C
Assay category
406
Transcription
147
DNA binding
DNA accessibility
4
DNA methylation
1
3D chromatin structure
Target of assay
129
histone
129
histone modification
65
broad histone mark
64
narrow histone mark
18
transcription factor
9
RNA binding protein
Date released
153
July, 2018
142
August, 2017
58
September, 2018
42
October, 2018
41
May, 2021
39
April, 2018
31
November, 2019
26
February, 2021
7
October, 2019
6
March, 2020
4
July, 2019
4
November, 2018
3
August, 2018
1
June, 2018
1
May, 2019
Available data
614
bam
572
bigWig
415
tsv
410
fastq
140
bed narrowPeak
59
bigBed narrowPeak
41
zippedFastqFolder
22
bed bed3+
tagAlign
12
bed broadPeak
7
bedpe bed3+
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
1
hdf5
Organism
558
Homo sapiens
Biosample type
345
tissue
160
primary cell
53
cell line
Organ
558
pancreas
554
liver
551
connective tissue
418
adipose tissue
244
epithelium
186
heart
136
vasculature
133
blood vessel
105
brain
75
artery
58
bone element
54
blood
54
bodily fluid
53
limb
51
kidney
29
embryo
28
nerve
21
musculature of body
14
spleen
12
vein
2
eye
1
pericardium
Project
552
AMP
6
T1D
Genome assembly (visualization)
558
GRCh38
554
hg19
Lab
558
AMP-T2D consortium
Audit category:
51
inconsistent ontology term
Audit category:
54
missing controlled_by
Audit category:
9
inconsistent control read length
1
inconsistent assembly
assay_slims!
DNA accessibility
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
558 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
WGBS
small RNA-seq
Hi-C
tissue
islet of Langerhans
260
23
6
body of pancreas
2
26
2
2
endocrine pancreas
14
pancreas
1
7
2
primary cell
pancreatic alpha cell
10
7
12
pancreatic beta cell
10
7
12
pancreatic ductal cell
4
13
10
pancreatic acinar cell
4
8
12
pancreatic endocrine cell
23
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cell line
EndoC_BH1
33
13
Panc1
6
1
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