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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
113
ChIP-seq
Assay category
DNA accessibility
113
DNA binding
Target of assay
65
histone
65
histone modification
49
transcription factor
36
broad histone mark
29
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
other post-translational modification
Date released
69
November, 2017
39
August, 2017
3
October, 2017
2
October, 2019
Available data
2444
bam
2264
bigWig
1315
bed narrowPeak
1233
fastq
1027
tsv
796
bigBed narrowPeak
390
tagAlign
113
bed broadPeak
93
zippedFastqFolder
78
bigBed broadPeak
68
txt
62
bed bed3+
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
5
hdf5
3
cool
3
tar
2
csv
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
107
Homo sapiens
Biosample type
57
cell line
35
tissue
21
primary cell
Organ
57
liver
15
brain
13
musculature of body
12
pancreas
6
epithelium
6
vasculature
4
blood vessel
2
vein
1
adipose tissue
1
connective tissue
Project
113
AMP
Genome assembly (visualization)
113
hg19
75
GRCh38
Lab
113
AMP-T2D consortium
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
2
inconsistent assembly
assay_slims!
DNA accessibility
lab.title!
Anna Gloyn, Oxford
month_released!
February, 2021
target.investigated_as!
other post-translational modification
BIOSAMPLE
ASSAY
113 results
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ChIP-seq
cell line
HepG2
57
tissue
skeletal muscle tissue
13
islet of Langerhans
6
pancreas
6
brain
3
cingulate gyrus
2
+ See 4 more…
primary cell
skeletal muscle myoblast
13
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
endothelial cell of umbilical vein
2
See all biosamples
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