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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
395
total RNA-seq
19
ChIP-seq
3
small RNA-seq
2
WGBS
1
pCHi-C
Assay category
398
Transcription
19
DNA binding
DNA accessibility
2
DNA methylation
Target of assay
17
transcription factor
5
RNA binding protein
2
histone
2
histone modification
2
narrow histone mark
Date released
386
February, 2021
16
August, 2017
12
July, 2019
5
October, 2018
1
August, 2018
Available data
437
bam
419
bigWig
401
tsv
41
fastq
8
tagAlign
7
bed narrowPeak
6
bigBed narrowPeak
4
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
1
bed broadPeak
1
bedpe bed3+
Organism
420
Homo sapiens
Biosample type
417
tissue
2
primary cell
1
in vitro differentiated cells
Organ
592
liver
572
pancreas
553
connective tissue
420
adipose tissue
233
epithelium
185
heart
112
vasculature
111
brain
109
blood vessel
61
artery
58
bone element
54
blood
54
bodily fluid
36
musculature of body
30
kidney
29
embryo
14
spleen
7
limb
2
eye
1
pericardium
1
vein
Project
420
AMP
Genome assembly (visualization)
418
GRCh38
417
hg19
Lab
420
AMP-T2D consortium
Audit category:
12
missing controlled_by
assay_slims!
DNA accessibility
month_released!
October, 2019
BIOSAMPLE
ASSAY
420 results
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total RNA-seq
ChIP-seq
small RNA-seq
WGBS
pCHi-C
tissue
adipose tissue
381
1
2
white adipose tissue
12
subcutaneous adipose tissue
6
2
1
omental fat pad
4
3
1
visceral abdominal adipose tissue
3
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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