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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
5
Hi-C
Assay category
5
3D chromatin structure
Date released
3
October, 2022
1
March, 2020
1
November, 2019
Available data
247
bam
227
bigWig
225
fastq
151
tsv
81
bed narrowPeak
41
zippedFastqFolder
26
bigBed narrowPeak
7
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
5
bed bed3+
5
bedpe bed3+
5
hic
4
bed broadPeak
4
bigBed broadPeak
3
cool
2
hdf5
Organism
5
Homo sapiens
Biosample type
4
primary cell
1
cell line
Organ
7
pancreas
5
epithelium
2
blood vessel
heart
2
liver
2
musculature of body
2
vasculature
1
adipose tissue
1
connective tissue
1
vein
Project
3
HPAP
2
AMP
Genome assembly (visualization)
5
hg19
Lab
3
Klaus Kaestner, Upenn
2
AMP-T2D consortium
Audit category:
3
audit script error
1
inconsistent ontology term
assay_slims!
DNA accessibility
month_released!
October, 2019
organ_slims!
heart
BIOSAMPLE
ASSAY
5 results
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Hi-C
primary cell
endothelial cell of umbilical vein
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
EndoC_BH1
1
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