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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ChIP-seq
52
single cell RNA-seq
41
WGBS
Assay category
DNA accessibility
79
DNA binding
52
Transcription
41
DNA methylation
Target of assay
49
transcription factor
30
histone
30
histone modification
16
broad histone mark
14
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
74
May, 2022
64
November, 2017
19
September, 2020
13
August, 2017
2
October, 2019
Available data
2915
bam
2740
bigWig
1528
tsv
1300
bed narrowPeak
1256
fastq
780
bigBed narrowPeak
392
tagAlign
157
txt
114
bed broadPeak
93
zippedFastqFolder
79
bigBed broadPeak
64
bed bed3+
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
8
csv
5
hdf5
3
cool
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
172
Homo sapiens
Biosample type
114
primary cell
58
cell line
Organ
58
liver
47
epithelium
41
pancreas
6
brain
6
vasculature
4
blood vessel
2
vein
Project
93
HPAP
79
AMP
Genome assembly (visualization)
79
hg19
62
GRCh38
Lab
93
Klaus Kaestner, Upenn
79
AMP-T2D consortium
Audit category:
13
inconsistent control read length
1
inconsistent assembly
assay_slims!
DNA accessibility
organ_slims!
artery
BIOSAMPLE
ASSAY
172 results
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ChIP-seq
single cell RNA-seq
WGBS
primary cell
Langerhans cell
52
pancreatic alpha cell
25
pancreatic beta cell
16
skeletal muscle myoblast
13
astrocyte of the cerebellum
2
+ See 3 more…
cell line
HepG2
58
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