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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
750
ChIP-seq
Assay category
750
DNA binding
DNA accessibility
Target of assay
392
transcription factor
353
histone
353
histone modification
224
broad histone mark
129
narrow histone mark
81
recombinant protein
80
RNA binding protein
33
chromatin remodeller
5
other context
5
other post-translational modification
Date released
308
November, 2017
93
May, 2019
64
April, 2019
63
November, 2018
48
October, 2019
40
October, 2018
36
December, 2017
31
August, 2017
30
December, 2018
21
January, 2019
10
June, 2019
6
October, 2017
Available data
2149
bam
2018
bigWig
1170
bed narrowPeak
953
tsv
934
fastq
750
bigBed narrowPeak
369
tagAlign
157
txt
107
bed broadPeak
73
bigBed broadPeak
52
zippedFastqFolder
44
bed bed3+
27
bed bedMethyl
27
bigBed bedMethyl
17
bedpe bed3+
17
hic
8
csv
3
tar
2
hdf5
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
744
Homo sapiens
Biosample type
371
tissue
353
cell line
26
primary cell
Organ
352
liver
94
brain
71
vasculature
69
blood vessel
64
heart
59
pancreas
54
blood
54
bodily fluid
48
limb
epithelium
24
kidney
24
nerve
21
artery
connective tissue
14
musculature of body
12
spleen
10
vein
6
adipose tissue
2
eye
Project
750
AMP
Genome assembly (visualization)
716
GRCh38
694
hg19
Lab
750
AMP-T2D consortium
Audit category:
28
inconsistent control
7
inconsistent ontology term
Audit category:
15
missing controlled_by
Audit category:
31
inconsistent control read length
9
inconsistent control run_type
3
inconsistent assembly
assay_slims!
DNA accessibility
files.file_type!
cool
organ_slims!
connective tissue
epithelium
BIOSAMPLE
ASSAY
750 results
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Clear Filters
ChIP-seq
tissue
liver
38
heart left ventricle
28
body of pancreas
26
tibial nerve
24
kidney
18
+ See 24 more…
cell line
HepG2
293
GM12878
54
Panc1
6
primary cell
skeletal muscle myoblast
14
skeletal muscle satellite cell
7
astrocyte of the cerebellum
2
cardiac muscle cell
2
skeletal muscle cell
1
See all biosamples
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