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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
432
ChIP-seq
159
total RNA-seq
3
small RNA-seq
1
Hi-C
1
WGBS
Assay category
432
DNA binding
162
Transcription
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
333
transcription factor
83
histone modification
82
histone
81
recombinant protein
56
RNA binding protein
52
narrow histone mark
30
broad histone mark
23
chromatin remodeller
13
control
2
other context
2
other post-translational modification
Date released
268
November, 2017
170
May, 2020
50
December, 2017
49
November, 2018
17
August, 2017
17
August, 2021
8
July, 2019
6
October, 2019
5
December, 2019
5
January, 2019
1
March, 2020
Available data
673
bam
596
bigWig
461
fastq
413
bed narrowPeak
352
bigBed narrowPeak
175
tsv
86
tagAlign
58
bed broadPeak
58
bigBed broadPeak
8
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
csv
1
hdf5
1
vcf
Organism
596
Homo sapiens
Biosample type
332
cell line
241
tissue
14
in vitro differentiated cells
9
primary cell
Organ
596
liver
572
pancreas
552
connective tissue
419
adipose tissue
249
epithelium
190
heart
187
brain
140
vasculature
137
blood vessel
79
artery
58
bone element
54
blood
54
bodily fluid
53
limb
51
kidney
34
musculature of body
29
embryo
28
nerve
14
spleen
12
vein
2
eye
1
pericardium
1
pituitary gland
0
ovary
Project
596
AMP
Genome assembly (visualization)
591
hg19
522
GRCh38
Lab
582
AMP-T2D consortium
14
Bing Ren, UCSD
Audit category:
27
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
assay_slims!
DNA accessibility
lab.title!
Katalin Susztak, Upenn
BIOSAMPLE
ASSAY
596 results
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ChIP-seq
total RNA-seq
small RNA-seq
Hi-C
WGBS
cell line
HepG2
326
5
1
tissue
liver
82
147
1
right lobe of liver
7
2
2
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
5
endothelial cell of hepatic sinusoid
1
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