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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
172
ChIP-seq
5
total RNA-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
Assay category
172
DNA binding
DNA accessibility
12
Transcription
3
3D chromatin structure
Target of assay
166
histone
166
histone modification
106
narrow histone mark
60
broad histone mark
6
control
3
RNA binding protein
3
transcription factor
Date released
76
October, 2019
66
November, 2017
25
May, 2019
14
July, 2019
6
October, 2017
Available data
208
bam
187
bigWig
170
bed narrowPeak
118
tagAlign
94
bigBed narrowPeak
26
tsv
18
fastq
15
bed broadPeak
6
bigBed broadPeak
3
bed bed3+
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
tagAlign bed3+
Organism
187
Homo sapiens
Biosample type
172
tissue
15
primary cell
Organ
568
pancreas
552
connective tissue
547
liver
419
adipose tissue
249
epithelium
190
heart
187
brain
140
vasculature
137
blood vessel
79
artery
58
bone element
53
limb
51
kidney
42
blood
42
bodily fluid
34
musculature of body
29
embryo
28
nerve
12
vein
9
spleen
2
eye
1
pericardium
1
pituitary gland
Project
187
AMP
Genome assembly (visualization)
180
GRCh38
136
hg19
Lab
187
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
assay_slims!
DNA accessibility
month_released!
November, 2018
BIOSAMPLE
ASSAY
187 results
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ChIP-seq
total RNA-seq
small RNA-seq
Hi-C
single cell RNA-seq
tissue
layer of hippocampus
17
temporal lobe
13
1
1
angular gyrus
14
brain
11
1
caudate nucleus
12
+ See 64 more…
primary cell
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
cerebellar granule cell
2
Purkinje cell
1
+ See 1 more…
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