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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
102
ChIP-seq
15
total RNA-seq
Assay category
102
DNA binding
15
Transcription
DNA accessibility
Target of assay
53
transcription factor
49
histone
49
histone modification
26
narrow histone mark
23
broad histone mark
5
RNA binding protein
3
chromatin remodeller
Date released
550
February, 2021
334
November, 2017
May, 2021
262
August, 2017
215
May, 2020
193
October, 2019
164
July, 2018
97
May, 2019
77
July, 2019
72
December, 2017
70
November, 2018
65
April, 2019
58
September, 2018
49
April, 2018
47
October, 2018
45
August, 2021
40
May, 2024
31
February, 2018
31
November, 2019
30
December, 2018
26
January, 2019
23
June, 2019
16
March, 2020
6
October, 2017
5
December, 2019
5
January, 2018
4
November, 2020
3
August, 2018
3
June, 2018
Available data
133
bam
123
tsv
117
bigWig
102
bed narrowPeak
94
fastq
57
txt
50
bigBed narrowPeak
24
tagAlign
20
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
117
Homo sapiens
Biosample type
54
in vitro differentiated cells
36
tissue
22
cell line
3
primary cell
2
stem cell
Organ
67
liver
19
epithelium
16
embryo
Project
117
AMP
Genome assembly (visualization)
116
hg19
103
GRCh38
Lab
103
AMP-T2D consortium
14
Bing Ren, UCSD
Audit category:
27
inconsistent control
2
inconsistent ontology term
Audit category:
11
inconsistent control read length
assay_slims!
DNA accessibility
month_released!
May, 2021
BIOSAMPLE
ASSAY
117 results
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Clear Filters
ChIP-seq
total RNA-seq
in vitro differentiated cells
neural progenitor cell
13
7
hepatocyte
14
pancreatic endoderm
6
Posterior foregut
4
definitive endodermal cell
4
+ See 2 more…
tissue
liver
29
right lobe of liver
7
cell line
HepG2
14
H1-hESC
8
primary cell
hepatocyte
3
stem cell
hESC
2
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