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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1390ChIP-seq
  • 1278total RNA-seq
  • 106single cell RNA-seq
  • 18small RNA-seq
  • 17WGBS
  • 5GRO-seq
  • 5Hi-C
Assay category
  • 1402Transcription
  • 1390DNA binding
  • DNA accessibility
  • 17DNA methylation
  • 53D chromatin structure
Target of assay
  • 869histone modification
  • 868histone
  • 496transcription factor
  • 440narrow histone mark
  • 427broad histone mark
  • 106RNA binding protein
  • 88recombinant protein
  • 36chromatin remodeller
  • 23control
  • 5other context
  • 5other post-translational modification
Date released
  • 550February, 2021
  • 334November, 2017
  • 298May, 2021
  • 262August, 2017
  • 215May, 2020
  • 193October, 2019
  • 164July, 2018
  • 97May, 2019
  • 77July, 2019
  • 72December, 2017
  • 70November, 2018
  • 65April, 2019
  • 58September, 2018
  • 49April, 2018
  • 47October, 2018
  • 45August, 2021
  • 40May, 2024
  • 31February, 2018
  • 31November, 2019
  • 30December, 2018
  • 26January, 2019
  • 23June, 2019
  • 16March, 2020
  • 6October, 2017
  • 5December, 2019
  • 5January, 2018
  • 4November, 2020
  • 3August, 2018
  • 3June, 2018
Available data
  • 3003bam
  • 2819bigWig
  • 1586tsv
  • 1325bed narrowPeak
  • 1256fastq
  • 801bigBed narrowPeak
  • 398tagAlign
  • 157txt
  • 114bed broadPeak
  • 93zippedFastqFolder
  • 79bigBed broadPeak
  • 64bed bed3+
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 8csv
  • 5hdf5
  • 3cool
  • 3tar
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 2813Homo sapiens
Biosample type
  • 1548tissue
  • 517cell line
  • 505primary cell
  • 246in vitro differentiated cells
  • 3stem cell
Organ
  • 596liver
  • 572pancreas
  • 552connective tissue
  • 419adipose tissue
  • 249epithelium
  • 190heart
  • 187brain
  • 140vasculature
  • 137blood vessel
  • 79artery
  • 58bone element
  • 54blood
  • 54bodily fluid
  • 53limb
  • 51kidney
  • 34musculature of body
  • 29embryo
  • 28nerve
  • 14spleen
  • 12vein
  • 2eye
  • 1pericardium
  • 1pituitary gland
Project
  • 2633AMP
  • 186T1D
Genome assembly (visualization)
  • 2701hg19
  • 2672GRCh38
  • 5hg18
Lab
  • 2550AMP-T2D consortium
  • 215Kyle Gaulton, UCSD
  • 40Patrick T. Ellinor, Broad
  • 14Bing Ren, UCSD
Audit category:
  • 181inconsistent ontology term
  • 28inconsistent control
Audit category:
  • 86missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 4inconsistent assembly
assay_slims!
  • DNA accessibility
BIOSAMPLE
ASSAY

2819 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
small RNA-seq
WGBS
GRO-seq
Hi-C
tissue
adipose tissue13812
islet of Langerhans292606
liver821471
bone tissue58
left cardiac atrium40
cell line
HepG232651
smooth muscle cell of the coronary artery452
GM1287854
EndoC_BH11333
H1-hESC8
primary cell
monocyte8453
CD8-positive, alpha-beta T cell334
pancreatic alpha cell71012
pancreatic beta cell71012
pancreatic ductal cell13410
in vitro differentiated cells
cardiomyocytes359
adipocyte474
neural progenitor cell137
cardiac precursors (cardiac muscle cell)19
pancreatic endoderm1241
stem cell
hESC21
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