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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
178
total RNA-seq
147
ChIP-seq
75
single cell RNA-seq
10
WGBS
Assay category
253
Transcription
147
DNA binding
DNA accessibility
10
DNA methylation
Target of assay
100
histone
100
histone modification
52
broad histone mark
48
narrow histone mark
30
control
17
transcription factor
8
RNA binding protein
Date released
163
August, 2017
58
September, 2018
39
July, 2018
37
February, 2023
37
October, 2018
34
April, 2018
16
September, 2020
6
February, 2021
6
May, 2022
6
September, 2017
4
November, 2018
3
August, 2018
1
June, 2018
Available data
614
bam
572
bigWig
415
tsv
410
fastq
140
bed narrowPeak
59
bigBed narrowPeak
41
zippedFastqFolder
22
bed bed3+
19
tagAlign
12
bed broadPeak
7
bedpe bed3+
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
1
hdf5
Organism
403
Homo sapiens
Biosample type
226
primary cell
184
tissue
Organ
410
pancreas
219
epithelium
146
liver
97
connective tissue
60
blood
60
bodily fluid
41
adipose tissue
27
embryo
22
spleen
9
brain
2
musculature of body
Project
351
AMP
59
HPAP
Genome assembly (visualization)
317
GRCh38
313
hg19
Lab
345
AMP-T2D consortium
59
Klaus Kaestner, Upenn
6
Kyle Gaulton, UCSD
Audit category:
5
inconsistent ontology term
Audit category:
54
missing controlled_by
Audit category:
9
inconsistent control read length
1
inconsistent assembly
assay_slims!
DNA accessibility
files.file_type!
vcf
month_released!
November, 2017
BIOSAMPLE
ASSAY
410 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
WGBS
primary cell
pancreatic alpha cell
52
13
12
6
pancreatic beta cell
21
13
12
pancreatic ductal cell
4
13
9
pancreatic endocrine cell
23
pancreatic acinar cell
4
8
9
+ See 5 more…
tissue
islet of Langerhans
97
28
6
body of pancreas
33
2
pancreas
16
2
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