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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
149
ChIP-seq
89
total RNA-seq
3
RRBS
3
WGBS
Assay category
149
DNA binding
89
Transcription
DNA accessibility
6
DNA methylation
Target of assay
84
histone
84
histone modification
45
narrow histone mark
43
transcription factor
38
broad histone mark
22
control
8
RNA binding protein
3
chromatin remodeller
Date released
244
August, 2017
76
February, 2023
60
October, 2018
59
September, 2018
50
July, 2018
44
April, 2018
39
February, 2018
38
September, 2020
34
December, 2018
31
December, 2017
28
November, 2018
25
January, 2019
18
February, 2021
9
November, 2017
9
October, 2017
6
May, 2022
6
September, 2017
5
January, 2018
4
August, 2018
3
June, 2018
Available data
244
fastq
240
bam
239
bigWig
109
bed narrowPeak
89
tsv
58
tagAlign
33
bed broadPeak
30
bed bed3+
21
bigBed narrowPeak
13
bigBed broadPeak
5
bed bedMethyl
5
bigBed bedMethyl
Organism
244
Homo sapiens
Biosample type
137
tissue
54
primary cell
53
in vitro differentiated cells
Organ
156
pancreas
70
connective tissue
liver
26
epithelium
17
adipose tissue
2
musculature of body
Project
244
AMP
Genome assembly (visualization)
221
hg19
218
GRCh38
Lab
244
AMP-T2D consortium
Audit category:
39
missing controlled_by
Audit category:
15
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
DNA accessibility
organ_slims!
liver
BIOSAMPLE
ASSAY
244 results
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Clear Filters
ChIP-seq
total RNA-seq
RRBS
WGBS
tissue
islet of Langerhans
22
89
white adipose tissue
12
pancreas
7
adipose tissue
2
3
skeletal muscle tissue
2
primary cell
skeletal muscle myoblast
15
1
pancreatic alpha cell
13
pancreatic beta cell
13
pancreatic endocrine cell
12
in vitro differentiated cells
adipocyte
53
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