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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
452
ChIP-seq
5
total RNA-seq
2
WGBS
1
Hi-C
1
RRBS
Assay category
452
DNA binding
5
Transcription
DNA accessibility
3
DNA methylation
1
3D chromatin structure
Target of assay
327
transcription factor
82
recombinant protein
77
control
57
RNA binding protein
45
histone modification
44
histone
25
broad histone mark
23
chromatin remodeller
19
narrow histone mark
2
other context
2
other post-translational modification
Date released
315
November, 2017
63
December, 2017
50
November, 2018
27
August, 2017
5
January, 2019
1
December, 2018
Available data
673
bam
596
bigWig
461
fastq
413
bed narrowPeak
352
bigBed narrowPeak
175
tsv
86
tagAlign
58
bed broadPeak
58
bigBed broadPeak
8
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
csv
1
hdf5
1
vcf
Organism
461
Homo sapiens
Biosample type
367
cell line
79
tissue
15
in vitro differentiated cells
Organ
461
liver
410
pancreas
225
epithelium
97
connective tissue
60
blood
60
bodily fluid
41
adipose tissue
27
embryo
22
spleen
18
brain
6
vasculature
3
blood vessel
2
musculature of body
0
esophagus
Project
461
AMP
Genome assembly (visualization)
386
hg19
339
GRCh38
Lab
461
AMP-T2D consortium
Audit category:
27
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
461 results
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ChIP-seq
total RNA-seq
WGBS
Hi-C
RRBS
cell line
HepG2
360
5
1
1
tissue
liver
67
1
1
right lobe of liver
10
in vitro differentiated cells
hepatocyte
15
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