Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 857ChIP-seq
  • 237total RNA-seq
  • 134single cell RNA-seq
  • 17WGBS
  • 5GRO-seq
  • 4RRBS
  • 1Hi-C
  • 1pCHi-C
Assay category
  • 857DNA binding
  • 371Transcription
  • DNA accessibility
  • 21DNA methylation
  • 13D chromatin structure
Target of assay
  • 454transcription factor
  • 230histone modification
  • 229histone
  • 168control
  • 118broad histone mark
  • 110narrow histone mark
  • 89RNA binding protein
  • 82recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 324November, 2017
  • 278August, 2017
  • 94December, 2017
  • 78November, 2018
  • 76February, 2023
  • 60October, 2018
  • 59September, 2018
  • 50July, 2018
  • 44April, 2018
  • 39February, 2018
  • 38September, 2020
  • 35December, 2018
  • 30January, 2019
  • 18February, 2021
  • 9October, 2017
  • 6May, 2022
  • 6September, 2017
  • 5January, 2018
  • 4August, 2018
  • 3June, 2018
Available data
  • 3003bam
  • 2819bigWig
  • 1586tsv
  • 1325bed narrowPeak
  • 1256fastq
  • 801bigBed narrowPeak
  • 398tagAlign
  • 157txt
  • 114bed broadPeak
  • 93zippedFastqFolder
  • 79bigBed broadPeak
  • 64bed bed3+
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 8csv
  • 5hdf5
  • 3cool
  • 3tar
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 1249Homo sapiens
Biosample type
  • 427cell line
  • 349primary cell
  • 336tissue
  • 140in vitro differentiated cells
  • 4stem cell
Organ
  • 461liver
  • 410pancreas
  • 225epithelium
  • 97connective tissue
  • 60blood
  • 60bodily fluid
  • 41adipose tissue
  • 27embryo
  • 22spleen
  • 18brain
  • 6vasculature
  • 3blood vessel
  • 2musculature of body
Project
  • 1124AMP
  • 132HPAP
Genome assembly (visualization)
  • 945hg19
  • 898GRCh38
  • 5hg18
Lab
  • 1118AMP-T2D consortium
  • 132Klaus Kaestner, Upenn
  • 6Kyle Gaulton, UCSD
Audit category:
  • 28inconsistent control
  • 11inconsistent ontology term
Audit category:
  • 89missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
assay_slims!
  • DNA accessibility
BIOSAMPLE
ASSAY

1256 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
WGBS
GRO-seq
RRBS
Hi-C
pCHi-C
cell line
HepG2360511
GM1287860
primary cell
pancreatic alpha cell1352126
pancreatic beta cell132112
exocrine cell39
Langerhans cell34
pancreatic ductal cell1349
tissue
islet of Langerhans28976
liver6711
body of pancreas332
spleen202
pancreas162
in vitro differentiated cells
adipocyte53
pancreatic endoderm1841
hepatocyte15
definitive endodermal cell821
primitive gut cell821
stem cell
hESC31
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego