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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
total RNA-seq
4
small RNA-seq
3
pCHi-C
3
single cell RNA-seq
Assay category
24
Transcription
Target of assay
3
control
Date released
12
February, 2020
11
July, 2019
3
March, 2020
1
October, 2019
Available data
208
bam
187
bigWig
170
bed narrowPeak
118
tagAlign
94
bigBed narrowPeak
27
tsv
18
fastq
15
bed broadPeak
6
bigBed broadPeak
3
bed bed3+
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
tagAlign bed3+
Organism
27
Homo sapiens
Biosample type
24
tissue
3
primary cell
Organ
478
connective tissue
415
pancreas
401
adipose tissue
174
liver
168
heart
155
epithelium
68
blood vessel
68
vasculature
58
artery
58
bone element
26
brain
24
kidney
14
embryo
9
musculature of body
7
limb
5
eye
5
nerve
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
27
AMP
Genome assembly (visualization)
12
GRCh38
12
hg19
Lab
27
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
27 results
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total RNA-seq
small RNA-seq
pCHi-C
single cell RNA-seq
tissue
frontal cortex
2
1
Ammon's horn
1
1
cerebellum
2
cerebellum (Hemisphere)
1
1
diencephalon
1
1
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primary cell
cerebellar granule cell
2
Purkinje cell
1
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