Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 77ChIP-seq
  • 23single cell RNA-seq
  • 22total RNA-seq
  • 1pCHi-C
Assay category
  • 77DNA binding
  • 45Transcription
  • DNA accessibility
Target of assay
  • 56transcription factor
  • 18control
  • 12RNA binding protein
  • 1chromatin remodeller
Date released
  • 38September, 2020
  • 29December, 2018
  • 20October, 2018
  • 10November, 2017
  • 8November, 2018
  • 6January, 2019
  • 6May, 2022
  • 4December, 2017
  • 1August, 2018
  • 1July, 2018
Available data
  • 123fastq
  • 84bam
  • 60bigWig
  • 59bed narrowPeak
  • 59bigBed narrowPeak
  • 6txt
  • 1bedpe bed3+
  • 1tsv
  • 1zippedFastqFolder
Organism
  • 123Homo sapiens
Biosample type
  • 46cell line
  • 39primary cell
  • 37tissue
  • 1in vitro differentiated cells
Organ
  • 35blood
  • 35bodily fluid
  • 34pancreas
  • 17epithelium
  • 15liver
  • 10adipose tissue
  • 10connective tissue
  • 7spleen
Project
  • 85AMP
  • 38HPAP
Genome assembly (visualization)
  • 60GRCh38
  • 60hg19
Lab
  • 79AMP-T2D consortium
  • 38Klaus Kaestner, Upenn
  • 6Kyle Gaulton, UCSD
assay_slims!
  • DNA accessibility
BIOSAMPLE
ASSAY

123 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
pCHi-C
cell line
GM1287835
HepG211
primary cell
Langerhans cell22
pancreatic alpha cell115
pancreatic beta cell1
tissue
body of pancreas11
spleen7
islet of Langerhans6
omental fat pad6
right lobe of liver4
in vitro differentiated cells
white fat cell1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego