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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
128
ChIP-seq
5
GRO-seq
5
total RNA-seq
1
Hi-C
1
single cell RNA-seq
Assay category
128
DNA binding
DNA accessibility
6
Transcription
1
3D chromatin structure
Target of assay
75
transcription factor
38
control
15
histone
15
histone modification
12
broad histone mark
12
recombinant protein
3
chromatin remodeller
3
narrow histone mark
1
RNA binding protein
Date released
53
November, 2017
48
December, 2017
18
August, 2017
10
January, 2019
5
January, 2018
4
November, 2018
1
December, 2018
1
September, 2020
Available data
139
fastq
133
bam
100
bigWig
83
bed narrowPeak
67
bigBed narrowPeak
11
bed bed3+
5
tsv
4
bed broadPeak
4
bigBed broadPeak
1
zippedFastqFolder
Organism
140
Homo sapiens
Biosample type
64
cell line
54
tissue
18
in vitro differentiated cells
3
stem cell
1
primary cell
Organ
105
liver
6
embryo
6
pancreas
5
blood
5
bodily fluid
5
connective tissue
2
adipose tissue
1
epithelium
Project
139
AMP
1
HPAP
Genome assembly (visualization)
95
hg19
90
GRCh38
5
hg18
Lab
139
AMP-T2D consortium
1
Klaus Kaestner, Upenn
Audit category:
27
inconsistent control
1
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
19
inconsistent control read length
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
140 results
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ChIP-seq
GRO-seq
total RNA-seq
Hi-C
single cell RNA-seq
cell line
HepG2
53
5
1
GM12878
5
tissue
liver
46
pancreas
4
islet of Langerhans
2
white adipose tissue
2
in vitro differentiated cells
pancreatic endoderm
4
1
Posterior foregut
2
1
adipocyte
3
definitive endodermal cell
2
1
primitive gut cell
2
1
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stem cell
hESC
2
1
primary cell
Langerhans cell
1
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