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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 163ChIP-seq
  • 130total RNA-seq
  • 85single cell RNA-seq
  • 52WGBS
  • 1Hi-C
  • 1pCHi-C
Assay category
  • 215Transcription
  • 163DNA binding
  • DNA accessibility
  • 52DNA methylation
  • 13D chromatin structure
Target of assay
  • 109transcription factor
  • 41control
  • 21RNA binding protein
  • 11chromatin remodeller
  • 10histone modification
  • 9histone
  • 6narrow histone mark
  • 3broad histone mark
  • 3other context
  • 3other post-translational modification
Date released
  • 103August, 2017
  • 80May, 2022
  • 44November, 2017
  • 37October, 2018
  • 33December, 2018
  • 32November, 2018
  • 27September, 2018
  • 22September, 2020
  • 18February, 2021
  • 13January, 2019
  • 9July, 2018
  • 7April, 2018
  • 4December, 2017
  • 2August, 2018
  • 1June, 2018
Available data
  • 358fastq
  • 314bam
  • 267bigWig
  • 146tsv
  • 122bed narrowPeak
  • 113bigBed narrowPeak
  • 75zippedFastqFolder
  • 6txt
  • 5bed bedMethyl
  • 5bigBed bedMethyl
  • 2csv
  • 1bedpe bed3+
Organism
  • 432Homo sapiens
Biosample type
  • 166tissue
  • 161primary cell
  • 104cell line
  • 1in vitro differentiated cells
Organ
  • 198pancreas
  • 86epithelium
  • 76liver
  • 45blood
  • 45bodily fluid
  • 23adipose tissue
  • 23connective tissue
  • 15spleen
Project
  • 318AMP
  • 114HPAP
Genome assembly (visualization)
  • 265GRCh38
  • 262hg19
Lab
  • 312AMP-T2D consortium
  • 114Klaus Kaestner, Upenn
  • 6Kyle Gaulton, UCSD
Audit category:
  • 7missing controlled_by
Audit category:
  • 9inconsistent control run_type
  • 8inconsistent control read length
  • 1inconsistent assembly
assay_slims!
  • DNA accessibility
BIOSAMPLE
ASSAY

432 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
WGBS
Hi-C
pCHi-C
tissue
islet of Langerhans97
body of pancreas132
spleen132
liver13
subcutaneous adipose tissue12
primary cell
Langerhans cell67
pancreatic alpha cell10331
pancreatic beta cell10216
pancreatic acinar cell42
pancreatic ductal cell42
cell line
HepG252511
GM1287845
in vitro differentiated cells
white fat cell1
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