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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
total RNA-seq
18
ChIP-seq
8
single cell RNA-seq
5
STARR-seq
3
Hi-C
2
Capture-C
1
whole genome sequencing assay
Assay category
DNA accessibility
67
Transcription
18
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
230
May, 2021
100
May, 2022
96
August, 2021
86
February, 2023
56
September, 2020
47
September, 2023
45
May, 2020
40
May, 2024
18
February, 2021
10
November, 2020
9
April, 2020
5
March, 2023
3
May, 2023
3
October, 2022
1
March, 2019
0
February, 2018
Available data
57
txt
14
bed narrowPeak
14
bigWig
10
tsv
2
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
96
Homo sapiens
Biosample type
60
tissue
34
cell line
2
in vitro differentiated cells
Organ
60
kidney
31
liver
2
connective tissue
2
pancreas
Project
96
AMP
Genome assembly (visualization)
18
hg19
Lab
AMP-T2D consortium
58
Katalin Susztak, Upenn
36
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
assay_slims!
DNA accessibility
lab.title!
AMP-T2D consortium
month_released!
August, 2018
BIOSAMPLE
ASSAY
96 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
STARR-seq
Hi-C
Capture-C
whole genome sequencing assay
tissue
kidney
49
8
1
islet of Langerhans
1
1
cell line
HepG2
9
18
2
1
1
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
adipocyte
1
osteoblast
1
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