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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
311
ChIP-seq
89
total RNA-seq
9
WGBS
6
RRBS
1
Hi-C
Assay category
311
DNA binding
89
Transcription
DNA accessibility
15
DNA methylation
1
3D chromatin structure
Target of assay
211
histone modification
210
histone
119
broad histone mark
90
narrow histone mark
53
control
47
transcription factor
8
RNA binding protein
3
chromatin remodeller
Date released
666
February, 2021
406
November, 2017
400
August, 2017
365
May, 2021
281
October, 2019
241
May, 2020
237
August, 2021
168
July, 2018
120
May, 2019
101
May, 2022
100
February, 2023
100
July, 2019
94
December, 2017
80
April, 2019
78
November, 2018
76
October, 2018
60
March, 2020
59
September, 2018
56
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
35
November, 2019
31
June, 2019
30
January, 2019
25
February, 2020
15
October, 2017
14
November, 2020
10
December, 2019
9
April, 2020
6
September, 2017
5
January, 2018
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
March, 2019
1
March, 2023
Available data
287
fastq
280
bam
268
bigWig
138
bed narrowPeak
99
tagAlign
89
tsv
42
bed broadPeak
38
bigBed narrowPeak
33
bed bed3+
13
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
1
bedpe
1
hic
Organism
409
Homo sapiens
Biosample type
295
tissue
67
in vitro differentiated cells
54
primary cell
Organ
184
pancreas
123
connective tissue
56
adipose tissue
52
liver
26
epithelium
26
musculature of body
15
brain
Project
416
AMP
Genome assembly (visualization)
273
hg19
248
GRCh38
Lab
415
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
43
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
assay_slims!
DNA accessibility
lab.title!
Anna Gloyn, Oxford
BIOSAMPLE
ASSAY
416 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
Hi-C
tissue
islet of Langerhans
42
89
1
liver
48
3
1
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
4
brain
15
+ See 3 more…
in vitro differentiated cells
adipocyte
67
primary cell
skeletal muscle myoblast
15
1
pancreatic alpha cell
13
pancreatic beta cell
13
pancreatic endocrine cell
12
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