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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
single cell RNA-seq
54
total RNA-seq
31
ChIP-seq
4
RRBS
3
snDrop-seq
2
RNA microarray
2
pCHi-C
1
Hi-C
1
small RNA-seq
Assay category
DNA accessibility
119
Transcription
31
DNA binding
4
DNA methylation
1
3D chromatin structure
Target of assay
22
histone
22
histone modification
12
broad histone mark
10
narrow histone mark
6
control
3
RNA binding protein
3
transcription factor
Date released
58
August, 2021
47
September, 2023
October, 2019
23
April, 2019
10
July, 2019
8
February, 2021
5
May, 2019
3
December, 2019
3
June, 2019
3
May, 2023
2
March, 2020
Available data
62
txt
37
bam
30
bigWig
24
bed narrowPeak
24
bigBed narrowPeak
18
tsv
5
csv
4
bed bedMethyl
4
bigBed bedMethyl
1
hic
Organism
162
Homo sapiens
Biosample type
145
tissue
15
primary cell
2
cell line
Organ
756
pancreas
725
liver
649
connective tissue
483
adipose tissue
373
epithelium
308
heart
164
brain
162
kidney
147
bone element
137
vasculature
133
blood vessel
69
artery
61
musculature of body
60
blood
60
bodily fluid
37
embryo
23
spleen
15
limb
10
lung
9
eye
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
115
AMP
47
KPMP
Genome assembly (visualization)
35
hg19
30
GRCh38
Lab
61
Katalin Susztak, Upenn
54
AMP-T2D consortium
47
KPMP
Bing Ren, UCSD
Audit category:
9
inconsistent ontology term
7
audit script error
assay_slims!
DNA accessibility
lab.title!
Bing Ren, UCSD
month_released!
October, 2019
BIOSAMPLE
ASSAY
162 results
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single cell RNA-seq
total RNA-seq
ChIP-seq
RRBS
snDrop-seq
RNA microarray
pCHi-C
Hi-C
small RNA-seq
tissue
kidney
64
49
23
1
1
metanephros
1
1
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
+ See 2 more…
primary cell
kidney epithelial cell
1
5
1
epithelial cell of proximal tubule
1
3
1
renal cortical epithelial cell
1
1
glomerular endothelial cell
1
cell line
RCC 7860 VHL
1
RCC 7860 vector
1
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