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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
64
total RNA-seq
17
ChIP-seq
4
Capture-C
1
Hi-C
1
RNA microarray
Assay category
170
Transcription
DNA accessibility
17
DNA binding
1
3D chromatin structure
Target of assay
17
histone
17
histone modification
9
narrow histone mark
broad histone mark
8
control
Date released
666
February, 2021
356
November, 2017
291
August, 2017
289
May, 2021
241
May, 2020
203
October, 2019
193
August, 2021
168
July, 2018
101
May, 2022
100
February, 2023
100
July, 2019
79
December, 2017
78
November, 2018
62
May, 2019
60
March, 2020
57
October, 2018
56
September, 2020
49
April, 2018
47
September, 2023
43
April, 2019
42
September, 2018
35
December, 2018
31
February, 2018
29
November, 2019
26
January, 2019
24
February, 2020
23
June, 2019
20
May, 2024
14
November, 2020
10
December, 2019
9
April, 2020
6
September, 2017
5
January, 2018
5
March, 2023
5
October, 2017
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
Available data
113
tsv
57
txt
32
bam
24
bigWig
17
tagAlign
9
bed narrowPeak
4
bed bed3+
1
hic
Organism
192
Homo sapiens
Biosample type
157
tissue
23
in vitro differentiated cells
10
cell line
3
primary cell
Organ
92
heart
58
kidney
8
embryo
6
blood vessel
6
vasculature
5
epithelium
3
connective tissue
3
liver
2
artery
2
pancreas
1
adipose tissue
Project
193
AMP
Genome assembly (visualization)
27
hg19
24
GRCh38
Lab
133
AMP-T2D consortium
58
Katalin Susztak, Upenn
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
assay_slims!
DNA accessibility
lab.title!
Bing Ren, UCSD
organ_slims!
nerve
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
193 results
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single cell RNA-seq
total RNA-seq
ChIP-seq
Capture-C
Hi-C
RNA microarray
tissue
kidney
8
49
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 10 more…
in vitro differentiated cells
neural progenitor cell
7
14
adipocyte
1
osteoblast
1
cell line
H1-hESC
8
EndoC_BH1
2
primary cell
hepatocyte
3
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