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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
545
total RNA-seq
84
RNA microarray
15
single cell RNA-seq
8
ChIP-seq
3
snDrop-seq
2
pCHi-C
Assay category
560
Transcription
DNA accessibility
8
DNA binding
Target of assay
5
transcription factor
3
control
Date released
648
February, 2021
406
November, 2017
400
August, 2017
365
May, 2021
281
October, 2019
241
May, 2020
237
August, 2021
168
July, 2018
120
May, 2019
100
July, 2019
94
December, 2017
80
April, 2019
78
November, 2018
76
October, 2018
59
March, 2020
59
September, 2018
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
35
November, 2019
31
June, 2019
30
January, 2019
27
May, 2022
25
February, 2020
24
February, 2023
15
October, 2017
14
November, 2020
10
December, 2019
9
April, 2020
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
3
June, 2018
1
March, 2019
1
October, 2022
Available data
554
bam
553
tsv
550
bigWig
89
txt
8
tagAlign
6
csv
5
bed narrowPeak
2
bed bed3+
Organism
657
Homo sapiens
Biosample type
546
tissue
87
cell line
22
in vitro differentiated cells
2
primary cell
Organ
450
connective tissue
386
adipose tissue
142
bone element
58
artery
58
blood vessel
58
heart
58
vasculature
26
epithelium
26
pancreas
9
lung
8
kidney
2
liver
Project
648
AMP
9
LungMap
Genome assembly (visualization)
552
hg19
550
GRCh38
Lab
648
AMP-T2D consortium
Klaus Kaestner, Upenn
9
Xin Sun, UCSD
Audit category:
128
inconsistent ontology term
5
audit script error
assay_slims!
DNA accessibility
lab.title!
Klaus Kaestner, Upenn
organ_slims!
mammary gland
BIOSAMPLE
ASSAY
657 results
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total RNA-seq
RNA microarray
single cell RNA-seq
ChIP-seq
snDrop-seq
pCHi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
lung
9
kidney
5
+ See 6 more…
cell line
smooth muscle cell of the coronary artery
52
6
EndoC_BH1
26
iPSC derived cell line
2
HepG2
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
primary cell
osteoblast
1
1
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