Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
44
ChIP-seq
25
total RNA-seq
6
Hi-C
6
RRBS
5
pCHi-C
2
small RNA-seq
1
WGBS
1
single cell RNA-seq
Assay category
DNA accessibility
44
DNA binding
28
Transcription
7
DNA methylation
6
3D chromatin structure
Target of assay
36
histone
36
histone modification
20
broad histone mark
16
narrow histone mark
7
control
1
RNA binding protein
1
transcription factor
Date released
26
August, 2017
20
October, 2019
13
June, 2019
11
July, 2019
7
May, 2019
5
March, 2020
4
February, 2023
3
February, 2020
1
May, 2022
Available data
36
bigWig
29
bed narrowPeak
27
bam
16
bigBed narrowPeak
15
tagAlign
14
tsv
13
bed broadPeak
5
bed bedMethyl
5
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
Organism
90
Homo sapiens
Biosample type
73
tissue
17
primary cell
Organ
762
liver
pancreas
650
connective tissue
483
adipose tissue
316
heart
298
epithelium
249
brain
191
kidney
178
vasculature
174
blood vessel
147
bone element
92
artery
78
limb
61
musculature of body
60
blood
60
bodily fluid
40
nerve
37
embryo
29
eye
23
spleen
19
vein
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
90
AMP
Genome assembly (visualization)
41
hg19
22
GRCh38
Lab
90
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
assay_slims!
DNA accessibility
lab.title!
Klaus Kaestner, Upenn
organ_slims!
pancreas
BIOSAMPLE
ASSAY
90 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
Hi-C
RRBS
pCHi-C
small RNA-seq
WGBS
single cell RNA-seq
tissue
skeletal muscle tissue
22
1
4
1
1
islet of Langerhans
2
14
4
muscle of leg
7
1
gastrocnemius medialis
1
4
psoas muscle
2
2
1
+ See 3 more…
primary cell
skeletal muscle satellite cell
8
1
1
retinal pigment epithelial cell
3
1
skeletal muscle cell
2
1
See all biosamples
Download