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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
61
ChIP-seq
6
WGBS
3
small RNA-seq
2
pCHi-C
1
RNA microarray
Assay category
401
Transcription
61
DNA binding
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
44
August, 2017
23
October, 2018
12
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
March, 2020
1
May, 2023
Available data
436
bam
417
bigWig
401
tsv
40
fastq
5
bed narrowPeak
5
bigBed narrowPeak
5
tagAlign
4
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
Organism
470
Homo sapiens
Biosample type
468
tissue
2
primary cell
1
in vitro differentiated cells
Organ
702
liver
690
pancreas
613
connective tissue
471
adipose tissue
346
epithelium
276
heart
176
kidney
152
vasculature
149
blood vessel
147
bone element
132
brain
86
artery
63
limb
59
blood
59
bodily fluid
48
musculature of body
32
nerve
29
embryo
26
eye
21
spleen
13
vein
10
lung
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
471
AMP
Genome assembly (visualization)
418
GRCh38
416
hg19
Lab
471
AMP-T2D consortium
Audit category:
12
missing controlled_by
assay_slims!
DNA accessibility
lab.title!
Mark McCarthy, Oxford
month_released!
November, 2020
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
471 results
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total RNA-seq
ChIP-seq
WGBS
small RNA-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
1
3
1
subcutaneous abdominal adipose tissue
25
3
subcutaneous adipose tissue
7
12
1
1
omental fat pad
5
11
1
white adipose tissue
12
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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