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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
440
ChIP-seq
1
Hi-C
Assay category
440
DNA binding
1
3D chromatin structure
Target of assay
272
transcription factor
88
histone
88
histone modification
75
control
66
recombinant protein
50
broad histone mark
39
RNA binding protein
38
narrow histone mark
17
chromatin remodeller
2
other context
2
other post-translational modification
Date released
666
February, 2021
406
November, 2017
400
August, 2017
365
May, 2021
281
October, 2019
241
May, 2020
237
August, 2021
168
July, 2018
120
May, 2019
101
May, 2022
100
February, 2023
100
July, 2019
94
December, 2017
80
April, 2019
78
November, 2018
76
October, 2018
60
March, 2020
59
September, 2018
56
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
35
November, 2019
31
June, 2019
30
January, 2019
25
February, 2020
15
October, 2017
14
November, 2020
10
December, 2019
9
April, 2020
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
March, 2019
Available data
426
bam
364
bigWig
359
fastq
343
bed narrowPeak
342
bigBed narrowPeak
78
tagAlign
70
bed broadPeak
64
bigBed broadPeak
3
tar
Organism
441
Homo sapiens
Biosample type
343
cell line
89
tissue
9
primary cell
Organ
316
liver
91
brain
27
blood
27
bodily fluid
7
spleen
6
epithelium
6
vasculature
3
blood vessel
Project
441
AMP
Genome assembly (visualization)
311
hg19
310
GRCh38
Lab
441
AMP-T2D consortium
Audit category:
1
inconsistent control
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
assay_slims!
DNA accessibility
lab.title!
Mark McCarthy, Oxford
BIOSAMPLE
ASSAY
441 results
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Clear Filters
ChIP-seq
Hi-C
cell line
HepG2
315
1
GM12878
27
tissue
layer of hippocampus
22
caudate nucleus
15
substantia nigra
15
cingulate gyrus
14
middle frontal area 46
14
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primary cell
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
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