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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
203
total RNA-seq
154
ChIP-seq
105
single cell RNA-seq
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
Hi-C
Assay category
308
Transcription
DNA accessibility
154
DNA binding
1
3D chromatin structure
Target of assay
134
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
230
May, 2021
58
August, 2021
49
February, 2023
45
May, 2020
40
September, 2020
39
May, 2022
12
February, 2021
9
April, 2020
3
May, 2023
Available data
215
bigWig
186
bam
114
bed narrowPeak
96
tsv
84
tagAlign
79
fastq
63
txt
52
zippedFastqFolder
2
bed bed3+
1
hic
Organism
485
Homo sapiens
Biosample type
355
primary cell
83
tissue
42
in vitro differentiated cells
5
cell line
Organ
115
pancreas
epithelium
61
kidney
9
lung
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
207
T1D
145
AMP
124
HPAP
9
LungMap
Genome assembly (visualization)
216
hg19
180
GRCh38
Lab
3058
AMP-T2D consortium
291
Kyle Gaulton, UCSD
124
Klaus Kaestner, Upenn
61
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
37
Bing Ren, UCSD
20
Karen Mohlke, UNC
9
Xin Sun, UCSD
4
Anna Gloyn, Oxford
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Struan F.A. Grant, CHOP
1
ITG
Audit category:
5
inconsistent ontology term
assay_slims!
DNA accessibility
organ_slims!
epithelium
BIOSAMPLE
ASSAY
485 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
Hi-C
primary cell
monocyte
53
84
1
Langerhans cell
85
exocrine cell
39
CD8-positive, alpha-beta T cell
4
33
1
B cell
2
1
+ See 32 more…
tissue
kidney
49
11
1
islet of Langerhans
11
lung
9
pancreas
1
thymus
1
in vitro differentiated cells
embryonic stem cell
5
37
cell line
EndoC_BH1
3
2
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